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| Package allowing simple processing of Protein Databank files (.pdb) to extract mundane statistics
| Package allowing simple processing of Protein Databank files (.pdb) to extract mundane statistics
| ProteinDataBank
| ProteinDataBank
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| Erik Anderson - eranders 'at' sci.utah.edu
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| Erik Anderson - eranders 'at' sci.utah.edu, Carlos Scheidegger - cscheid 'at' sci.utah.edu
| {{targz
| {{targz
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     |link=http://www.sci.utah.edu/~eranders/packages/PDB.tar.gz
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     |link=http://www.sci.utah.edu/~cscheid/software/vistrails/PDB.tar.gz
     |text=PDB.tar.gz}}
     |text=PDB.tar.gz}}
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|-

Revision as of 10:21, 29 June 2007

Please note that the packages below are created and maintained outside of the VisTrails repository. Installation of them requires extracting them to the appropriate userpackages directory. Many of the packages listed below are incomplete or works in progress. Please take that into consideration during their use.

User Packages Description Package Name Primary Contact Download
  • Protein Data Bank
Package allowing simple processing of Protein Databank files (.pdb) to extract mundane statistics ProteinDataBank Erik Anderson - eranders 'at' sci.utah.edu, Carlos Scheidegger - cscheid 'at' sci.utah.edu Targz.png PDB.tar.gz
  • ITK
Wrapping of the Insight ToolKit available from KitWare. This is an incomplete set of packages and work is being done to incorporate more of the ITK functionality into the wrappers. DICOM reading is now supported through ITK's GDCMReader module set. This requires CableSWIG and WrapITK. itk Erik Anderson - eranders 'at' sci.utah.edu Targz.png ITK.tar.gz
  • Matlab
Modules allowing access to a local Matlab engine and interpreter. This is an incomplete set of packages and work is being done to incorporate more functionality into the wrappers. This requires Matlab and MLabWrap. Matlab Erik Anderson - eranders 'at' sci.utah.edu Targz.png Matlab.tar.gz
  • Trimesh2
Modules allowing access to the trimesh2 library. It requires access to the trimesh2 executables (notably, mesh_filter). trimesh2 Carlos Scheidegger - cscheid 'at' sci.utah.edu Py_file.png trimesh2.py
  • Metro
Modules allowing access to VCG's metro tool. It requires access to the metro executable. trimesh2 Carlos Scheidegger - cscheid 'at' sci.utah.edu Py_file.png metro.py
  • LIBSVM
Modules allowing access to LIBSVM tool. It requires access to the libsvm executables. Instructions and example file are included in the package. libsvm Emanuele Santos - emanuele 'at' sci.utah.edu Targz.png vistrails_libsvm.tar.gz
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