Difference between revisions of "Provenance challenge"
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This page describes the implementation of how to answer the queries of the second provenance challenge. | This page describes the implementation of how to answer the queries of the second provenance challenge. | ||
The goal of this project is to | The goal of this project is to create an api capable of querying different kinds of databases containing provenance data. The main focus will be on provenance generated by scientific workflows. | ||
== primitives == | |||
The api will deal with the basic primitives describing workflow executions. | |||
--[[User:Tommy|Tommy]] | |||
node types: | |||
<tr><td>dataitem</td></tr> | |||
<tr><td>module</td></tr> | |||
<tr><td>moduleInstance</td></tr> | |||
<tr><td>moduleExecution</td></tr> | |||
<tr><td>workflow</td></tr> | |||
<tr><td>workflowExecution</td></tr> | |||
<tr><td>inputPort</td></tr> | |||
<tr><td>outputPort</td></tr> | |||
Relations: | |||
Relation Input Output | |||
---------------------------------------------- | |||
exists all boolean | |||
equals all boolean | |||
annotations all dict of key/value pairs | |||
getInputPortForData dataItem inputPort | |||
getOutputPortForData dataItem outputPort | |||
getDataFromInputPort inputPort dataItem | |||
getDataFromOutputPort outputPort dataItem | |||
hasInputPort moduleInstance inputPort | |||
inputPortOf inputPort moduleInstance | |||
hasOutputPort moduleInstance outputPort | |||
outputPortOf outputPort moduleInstance | |||
outputOf dataItem moduleExecution | |||
inputOf dataItem moduleExecution | |||
hasOutput moduleExecution dataItem | |||
hasInput moduleExecution dataItem | |||
startTime moduleExecution time | |||
endTime moduleExecution time | |||
startTime workflowExecution time | |||
endTime workflowExecution time | |||
executionOf moduleExecution moduleInstance | |||
executionOf workflowExecution workflowInstance | |||
hasExecution moduleInstance moduleExecution | |||
hasExecution workflowInstance workflowExecution | |||
executions workflowExecution moduleExecution | |||
executedIn moduleExecution workflowExecution | |||
inWorkflow moduleInstance workflow | |||
hasModule workflow moduleInstance | |||
connectedTo inputPort outputPort | |||
connectedTo outputPort inputPort | |||
runsModule moduleInstance module | |||
hasInstance module moduleInstance | |||
derived relations: (might be native) | |||
derivedFrom dataItem dataItem | |||
derivedData dataItem dataItem | |||
previousModuleExecution moduleExecution moduleExecution | |||
transitive relations: | |||
datatype relation | |||
-------------------------------- | |||
upstreams: | |||
dataitem derivedFrom - .outputOf()[forall].hasInput() | |||
moduleInstance prevModuleInstance - .hasInputPort()[forall].connectedTo().outputPortOf() | |||
moduleExecution prevModuleExecution - .hasInput()[forall].OutputOf() | |||
downstreams: | |||
dataitem derivedData - .inputOf()[forall].hasOutput() | |||
moduleInstance nextModuleInstance - .hasOutputPort()[forall].connectedTo().inputPortOf() | |||
moduleExecution nextModuleExecution - .hasOutput()[forall].inputOf() | |||
--[[User:Tommy|Tommy]] 09:05, 12 April 2007 (MDT) | |||
Revision as of 15:05, 12 April 2007
Second provenance challenge design overview
This page describes the implementation of how to answer the queries of the second provenance challenge.
The goal of this project is to create an api capable of querying different kinds of databases containing provenance data. The main focus will be on provenance generated by scientific workflows.
primitives
The api will deal with the basic primitives describing workflow executions.
node types:
dataitem module moduleInstance moduleExecution workflow workflowExecution inputPort outputPort
Relations:
Relation Input Output
exists all boolean equals all boolean annotations all dict of key/value pairs
getInputPortForData dataItem inputPort getOutputPortForData dataItem outputPort getDataFromInputPort inputPort dataItem getDataFromOutputPort outputPort dataItem
hasInputPort moduleInstance inputPort inputPortOf inputPort moduleInstance hasOutputPort moduleInstance outputPort outputPortOf outputPort moduleInstance
outputOf dataItem moduleExecution
inputOf dataItem moduleExecution
hasOutput moduleExecution dataItem
hasInput moduleExecution dataItem
startTime moduleExecution time endTime moduleExecution time startTime workflowExecution time endTime workflowExecution time
executionOf moduleExecution moduleInstance executionOf workflowExecution workflowInstance
hasExecution moduleInstance moduleExecution hasExecution workflowInstance workflowExecution
executions workflowExecution moduleExecution executedIn moduleExecution workflowExecution
inWorkflow moduleInstance workflow hasModule workflow moduleInstance
connectedTo inputPort outputPort connectedTo outputPort inputPort
runsModule moduleInstance module hasInstance module moduleInstance
derived relations: (might be native)
derivedFrom dataItem dataItem derivedData dataItem dataItem previousModuleExecution moduleExecution moduleExecution
transitive relations:
datatype relation
upstreams:
dataitem derivedFrom - .outputOf()[forall].hasInput() moduleInstance prevModuleInstance - .hasInputPort()[forall].connectedTo().outputPortOf() moduleExecution prevModuleExecution - .hasInput()[forall].OutputOf()
downstreams:
dataitem derivedData - .inputOf()[forall].hasOutput() moduleInstance nextModuleInstance - .hasOutputPort()[forall].connectedTo().inputPortOf() moduleExecution nextModuleExecution - .hasOutput()[forall].inputOf()
--Tommy 09:05, 12 April 2007 (MDT)