Provenance challenge - Revision history

Tommy at 09:49, 18 June 2007

2007-06-18T09:49:04Z

← Older revision		Revision as of 09:49, 18 June 2007
Line 9:		Line 9:

	The SWDM aims to capture entities and relationships that are relevant to both the definition		The SWDM aims to capture entities and relationships that are relevant to both the definition
	and execution of workflows. The goal is to define a ''general'' model that is able to represent		and execution of workflows. The goal is to define a "general" model that is able to represent
	provenance information obtained by different workflow systems.		provenance information obtained by different workflow systems.

Line 44:		Line 44:
	</td></tr>		</td></tr>
	<tr><td>input</td><td>		<tr><td>input</td><td>
	represents an input/parameter of a module		represents an input/parameter slot of a module
	</td></tr>		</td></tr>
	<tr><td>output</td><td>represents an output/result of a module		<tr><td>output</td><td>represents an output/result slot of a module
	<tr><td>inPort</td><td>		<tr><td>inPort</td><td>
	represents a connected input port in the workflow		represents a connected input port in the workflow
Line 66:		Line 66:
	Execution:		Execution:
	<ul>		<ul>
	<li>getDataFromOutPort - Get all data items created from this ~~type of~~ port</li>		<li>getDataFromOutPort - Get all data items created from this port</li>
	<li>getOutPortFromData - Get the port that created this data item</li>		<li>getOutPortFromData - Get the port that created this data item</li>
	<li>getDataFromInPort - Get all data items used as input to this type of port</li>		<li>getDataFromInPort - Get all data items used as input to this type of port</li>
Line 74:		Line 74:
	<li>getExecutionFromOutData - Get the execution that created this data item</li>		<li>getExecutionFromOutData - Get the execution that created this data item</li>
	<li>getOutDataFromExecution - Get the data created by this execution</li>		<li>getOutDataFromExecution - Get the data created by this execution</li>
	<li>~~getInstanceFromExecution~~ - Get the ~~instance~~ that this execution executes</li>		<li>getModuleFromExecution - Get the module that this execution executes</li>
	<li>~~getExecutionFromInstance~~ - Get the executions of this ~~instance~~</li>		<li>getExecutionFromModule - Get the executions of this module</li>
	<li>getRunFromExecution - Get the workflow run that this execution is associated with</li>		<li>getRunFromExecution - Get the workflow run that this execution is associated with</li>
	<li>getExecutionFromRun - Get the executions in this workflow run</li>		<li>getExecutionFromRun - Get the executions in this workflow run</li>
	<li>getRunFromWorkflow - Get the runs of this workflow</li>		<li>getRunFromWorkflow - Get the runs of this workflow</li>
	<li>getWorkflowFromRun - Get the workflow that this is a run of</li>		<li>getWorkflowFromRun - Get the workflow that this is a run of</li>
	<li>~~getInstanceFromWorkflow~~ - Get all module instances in this workflow</li>		<li>getModuleFromWorkflow - Get all module instances in this workflow</li>
	<li>~~getWorkflowFromInstance~~ - Get the workflow ~~thaty~~ this ~~instance~~ is in</li>		<li>getWorkflowFromModule - Get the workflow that this module is part of</li>
	<li>getParentDataItem - Get the data items this is derived from</li>		<li>getParentDataItem - Get the data items this is derived from</li>
	<li>getChildDataItem - Get the data items derived from this one</li>		<li>getChildDataItem - Get the data items derived from this one</li>
Line 90:		Line 90:
	Workflow:		Workflow:
	<ul>		<ul>
	<li>~~getModuleFromInstance~~ - Get the module this is an instance of</li>		<li>getProcedureFromModule - Get the module this is an instance of</li>
	<li>~~getInstanceFromModule~~ - Get the instances of a module</li>		<li>getModuleFromProcedure - Get the instances of a module</li>
	<li>~~getStartConnectionFromInstance~~ - Get the ~~connections that leads from~~ a module</li>		<li>getOutPortFromModule - Get the output port of a module</li>
	<li>~~getEndConnectionFromInstance~~ - Get the ~~connections that leads to~~ a module</li>		<li>getInPortFromModule - Get the input port of a module</li>
	<li>~~getStartInstanceFromConnection~~ - Get the module that ~~is the start of the connection~~</li>		<li>getModuleFromOutPort - Get the module that has this out port</li>
	<li>~~getEndInstanceFromConnection~~ - Get the module that ~~is the end of the connection~~</li>		<li>getModuleFromInPort - Get the module that has this in port</li>
	<li>~~getConnectionFromWorkflow~~ - Get all ~~the connections in the workflow~~</li>		<li>getInPortFromOutPort - Get all InPorts connected to this OutPort</li>
	<li>~~getWorkflowFromConnection~~ - Get ~~the workflow~~ this ~~connection is in~~</li>		<li>getOutPortFromInPort - Get all OutPorts connected to this InPort</li>
	<li>getParentWorkflow - Get the workflow this is derived from</li>		<li>getParentWorkflow - Get the workflow this is derived from</li>
	<li>getChildWorkflow - Get the workflows that is derived from this one</li>		<li>getChildWorkflow - Get the workflows that is derived from this one</li>
Line 105:		Line 105:
	<li>getOutPortFromConnection - Get the Output port it is connected to</li>		<li>getOutPortFromConnection - Get the Output port it is connected to</li>
	Derived:		Derived:
	<li>~~getParentInstance~~ - Get the previous ~~instances~~ it is connected to</li>		<li>getParentModule - Get the previous modules it is connected to</li>
	<li>~~getChildInstance~~ - Get the next ~~instances~~ it is connected to</li>		<li>getChildModule - Get the next modules it is connected to</li>
	</ul>		</ul>

	Module:		Module:
	<ul>		<ul>
	<li>~~getOutPortFromModule~~ - Get all output ports of a ~~module~~</li>		<li>getOutputFromProcedure - Get all output ports of a procedure</li>
	<li>~~getInPortFromModule~~ - Get all input ports of a ~~module~~</li>		<li>getInputFromProcedure - Get all input ports of a procedure</li>
	<li>~~getModuleFromOutPort~~ - Get all ~~modules~~ having this output port</li>		<li>getProcedureFromOutput - Get all procedures having this output port</li>
	<li>~~getModuleFromInPort~~ - Get all ~~modules~~ having this input port</li>		<li>getProcedureFromInput - Get all procedures having this input port</li>
	</ul>		</ul>

Tommy at 08:54, 18 June 2007

2007-06-18T08:54:30Z

← Older revision		Revision as of 08:54, 18 June 2007
Line 26:		Line 26:
	<tr><th>name</th><th>description</th></tr>		<tr><th>name</th><th>description</th></tr>
	<tr><td>dataitem</td><td>		<tr><td>dataitem</td><td>
	A ~~dataitem~~ that is input/output to ~~a module execution~~.		A data item that is input/output to executions.
	This could be a local file, a file on the internet with a url, or some internal representation of the file in the workflow system.		This could be a local file, a file on the internet with a url, or some internal representation of the file in the workflow system.
	</td></tr><tr><td>~~module~~</td><td>		</td></tr><tr><td>procedure</td><td>
	the ~~module~~/service that is to be executed. This could be a local program, a web service, a sub-workflow or some other kind of processing entity.		the procedure/service that is to be executed. This could be a local program, a web service, a sub-workflow or some other kind of processing entity.
	</td></tr>		</td></tr>
	<tr><td>~~moduleInstance~~</td><td>		<tr><td>module</td><td>
	the instance of a ~~module~~ in the workflow. This ~~instance~~ is connected with other ~~instances~~ through ~~module~~ ports.		the instance of a procedure in the workflow. This module is connected with other module through ports.
	</td></tr>		</td></tr>
	<tr><td>~~moduleExecution~~</td><td>		<tr><td>execution</td><td>
	The execution of a module as recorded internally by the workflow-system or externally in some other way.		The execution of a module as recorded internally by the workflow-system or externally in some other way.
	</td></tr>		</td></tr>
Line 40:		Line 40:
	a description of the process containing the module instances and connections		a description of the process containing the module instances and connections
	</td></tr>		</td></tr>
	<tr><td>~~workflowExecution~~</td><td>		<tr><td>run</td><td>
	Executions are grouped into a ~~workflowExecution~~ that is associated with a workflow.		Executions are grouped into a run that is associated with a workflow.
	</td></tr>		</td></tr>
	<tr><td>~~inputPort~~</td><td>		<tr><td>input</td><td>
	represents an input/parameter of a module		represents an input/parameter of a module
	</td></tr>		</td></tr>
	<tr><td>~~outputPort~~</td><td>represents an output/result of a module		<tr><td>output</td><td>represents an output/result of a module
			<tr><td>inPort</td><td>
			represents a connected input port in the workflow
			</td></tr>
			<tr><td>outPort</td><td>represents a connected output port in the workflow
	</td></tr>		</td></tr>
	~~<tr><td>connection</td><td>represents a connection between module Instances on specific ports</td></tr>~~
	</table>		</table>

Tommy at 08:47, 18 June 2007

2007-06-18T08:47:24Z

← Older revision		Revision as of 08:47, 18 June 2007
Line 19:		Line 19:
	<b>Execution log</b> is the information about a workflow execution. It contains information about the processors that were executed and the data items that were created.		<b>Execution log</b> is the information about a workflow execution. It contains information about the processors that were executed and the data items that were created.

	[[Image:~~pc_model_er~~.~~gif~~]]		[[Image:model.png]]

	== Model Entities ==		== Model Entities ==

Tommy at 11:35, 1 June 2007

2007-06-01T11:35:13Z

← Older revision		Revision as of 11:35, 1 June 2007
Line 80:		Line 80:
	<li>getWorkflowFromInstance - Get the workflow thaty this instance is in</li>		<li>getWorkflowFromInstance - Get the workflow thaty this instance is in</li>
	<li>getParentDataItem - Get the data items this is derived from</li>		<li>getParentDataItem - Get the data items this is derived from</li>
	<li>getChildDataItem - Get the </li>		<li>getChildDataItem - Get the data items derived from this one</li>
	<li>getParentExecution</li>		<li>getParentExecution - Get the execution that preceded this one</li>
	<li>getChildExecution</li>		<li>getChildExecution - Get the execution that came after this one</li>
	</ul>		</ul>

Tommy at 12:45, 9 May 2007

2007-05-09T12:45:45Z

← Older revision		Revision as of 12:45, 9 May 2007
Line 63:		Line 63:
	Execution:		Execution:
	<ul>		<ul>
	<li>getDataFromOutPort</li>		<li>getDataFromOutPort - Get all data items created from this type of port</li>
	<li>getOutPortFromData</li>		<li>getOutPortFromData - Get the port that created this data item</li>
	<li>getDataFromInPort</li>		<li>getDataFromInPort - Get all data items used as input to this type of port</li>
	<li>getInPortFromData</li>		<li>getInPortFromData - Get the input ports that have used this data item</li>
	<li>getExecutionFromInData</li>		<li>getExecutionFromInData - Get the execution that used this data item</li>
	<li>getInDataFromExecution</li>		<li>getInDataFromExecution - Get the data used by this execution</li>
	<li>getExecutionFromOutData</li>		<li>getExecutionFromOutData - Get the execution that created this data item</li>
	<li>getOutDataFromExecution</li>		<li>getOutDataFromExecution - Get the data created by this execution</li>
	<li>getInstanceFromExecution</li>		<li>getInstanceFromExecution - Get the instance that this execution executes</li>
	<li>getExecutionFromInstance</li>		<li>getExecutionFromInstance - Get the executions of this instance</li>
	<li>getRunFromExecution</li>		<li>getRunFromExecution - Get the workflow run that this execution is associated with</li>
	<li>getExecutionFromRun</li>		<li>getExecutionFromRun - Get the executions in this workflow run</li>
	<li>getRunFromWorkflow</li>		<li>getRunFromWorkflow - Get the runs of this workflow</li>
	<li>getWorkflowFromRun</li>		<li>getWorkflowFromRun - Get the workflow that this is a run of</li>
	<li>getInstanceFromWorkflow</li>		<li>getInstanceFromWorkflow - Get all module instances in this workflow</li>
	<li>getWorkflowFromInstance</li>		<li>getWorkflowFromInstance - Get the workflow thaty this instance is in</li>
	<li>getParentDataItem</li>		<li>getParentDataItem - Get the data items this is derived from</li>
	<li>getChildDataItem</li>		<li>getChildDataItem - Get the </li>
	<li>getParentExecution</li>		<li>getParentExecution</li>
	<li>getChildExecution</li>		<li>getChildExecution</li>
Line 102:		Line 102:
	<li>getOutPortFromConnection - Get the Output port it is connected to</li>		<li>getOutPortFromConnection - Get the Output port it is connected to</li>
	Derived:		Derived:
	<li>getParentInstance</li>		<li>getParentInstance - Get the previous instances it is connected to</li>
	<li>getChildInstance</li>		<li>getChildInstance - Get the next instances it is connected to</li>
	</ul>		</ul>

	Module:		Module:
	<ul>		<ul>
	<li>getOutPortFromModule</li>		<li>getOutPortFromModule - Get all output ports of a module</li>
	<li>getInPortFromModule</li>		<li>getInPortFromModule - Get all input ports of a module</li>
	<li>getModuleFromOutPort</li>		<li>getModuleFromOutPort - Get all modules having this output port</li>
	<li>getModuleFromInPort</li>		<li>getModuleFromInPort - Get all modules having this input port</li>
	</ul>		</ul>

Line 120:		Line 120:
	<li>getAnnotation</li>		<li>getAnnotation</li>
	</ul>		</ul>

	=== Upstream ===		=== Upstream ===

Tommy at 10:16, 8 May 2007

2007-05-08T10:16:42Z

← Older revision		Revision as of 10:16, 8 May 2007
Line 87:		Line 87:
	Workflow:		Workflow:
	<ul>		<ul>
	<li>getModuleFromInstance - Get the ~~motdle~~ this is an instance of</li>		<li>getModuleFromInstance - Get the module this is an instance of</li>
	<li>getInstanceFromModule - Get the instances of a module</li>		<li>getInstanceFromModule - Get the instances of a module</li>
	<li>getStartConnectionFromInstance - Get the connections that leads from a module</li>		<li>getStartConnectionFromInstance - Get the connections that leads from a module</li>

Tommy at 10:16, 8 May 2007

2007-05-08T10:16:12Z

← Older revision		Revision as of 10:16, 8 May 2007
Line 87:		Line 87:
	Workflow:		Workflow:
	<ul>		<ul>
	<li>getModuleFromInstance - Get the ~~motule~~ this is an instance of</li>		<li>getModuleFromInstance - Get the motdle this is an instance of</li>
	<li>getInstanceFromModule</li>		<li>getInstanceFromModule - Get the instances of a module</li>
	<li>getStartConnectionFromInstance</li>		<li>getStartConnectionFromInstance - Get the connections that leads from a module</li>
	<li>getEndConnectionFromInstance</li>		<li>getEndConnectionFromInstance - Get the connections that leads to a module</li>
	<li>getStartInstanceFromConnection</li>		<li>getStartInstanceFromConnection - Get the module that is the start of the connection</li>
	<li>getEndInstanceFromConnection</li>		<li>getEndInstanceFromConnection - Get the module that is the end of the connection</li>
	<li>getConnectionFromWorkflow</li>		<li>getConnectionFromWorkflow - Get all the connections in the workflow</li>
	<li>getWorkflowFromConnection</li>		<li>getWorkflowFromConnection - Get the workflow this connection is in</li>
	<li>getParentWorkflow</li>		<li>getParentWorkflow - Get the workflow this is derived from</li>
	<li>getChildWorkflow</li>		<li>getChildWorkflow - Get the workflows that is derived from this one</li>
	<li>getConnectionFromInPort</li>		<li>getConnectionFromInPort - Get all connections using this port</li>
	<li>getInPortFromConnection</li>		<li>getInPortFromConnection - Get the Input port it is connected to</li>
	<li>getConnectionFromOutPort</li>		<li>getConnectionFromOutPort - Get all connections using this port</li>
	<li>getOutPortFromConnection</li>		<li>getOutPortFromConnection - Get the Output port it is connected to</li>
	Derived:		Derived:
	<li>getParentInstance</li>		<li>getParentInstance</li>

Tommy at 10:07, 8 May 2007

2007-05-08T10:07:33Z

← Older revision		Revision as of 10:07, 8 May 2007
Line 87:		Line 87:
	Workflow:		Workflow:
	<ul>		<ul>
	<li>getModuleFromInstance</li>		<li>getModuleFromInstance - Get the motule this is an instance of</li>
	<li>getInstanceFromModule</li>		<li>getInstanceFromModule</li>
	<li>getStartConnectionFromInstance</li>		<li>getStartConnectionFromInstance</li>
Line 101:		Line 101:
	<li>getConnectionFromOutPort</li>		<li>getConnectionFromOutPort</li>
	<li>getOutPortFromConnection</li>		<li>getOutPortFromConnection</li>
			Derived:
			<li>getParentInstance</li>
			<li>getChildInstance</li>
	</ul>		</ul>

Tommy: /* Possible edges in the data model */

2007-05-03T14:14:50Z

Possible edges in the data model

← Older revision		Revision as of 14:14, 3 May 2007
Line 190:		Line 190:
	Another partially implemented XML source is the [http://twiki.ipaw.info/bin/view/Challenge/Southampton2 Southampton] team.		Another partially implemented XML source is the [http://twiki.ipaw.info/bin/view/Challenge/Southampton2 Southampton] team.

	~~== Possible edges in the data model ==~~

	~~<table border="2" width="300" height="300">~~
	~~<tr><th>\</th><th>W</th><th>I</th><th>C</th><th>M</th><th>O</th><th>I</th><th>R</th><th>E</th><th>D</th><th>A</th></tr>~~
	~~<tr><th>W</th><td bgcolor="blue">X</td><td>X</td><td>X</td><td> </td><td> </td><td> </td><td>X</td><td> </td><td> </td><td>X</td></tr>~~
	~~<tr bgcolor="green"><th>I</th><td> </td><td bgcolor="blue">X</td><td>X</td><td>X</td><td> </td><td> </td><td> </td><td>X</td><td> </td><td>X</td></tr>~~
	~~<tr><th>C</th><td> </td><td> </td><td bgcolor="blue">X</td><td> </td><td>X</td><td>X</td><td> </td><td> </td><td> </td><td>X</td></tr>~~
	~~<tr bgcolor="green"><th>M</th><td> </td><td> </td><td> </td><td bgcolor="blue"> </td><td>X</td><td>X</td><td> </td><td> </td><td> </td><td>X</td></tr>~~
	~~<tr><th>O</th><td> </td><td> </td><td> </td><td> </td><td bgcolor="blue"> </td><td> </td><td> </td><td> </td><td>X</td><td>X</td></tr>~~
	~~<tr bgcolor="green"><th>I</th><td> </td><td> </td><td> </td><td> </td><td> </td><td bgcolor="blue"> </td><td> </td><td> </td><td>X</td><td>X</td></tr>~~
	~~<tr><th>R</th><td> </td><td> </td><td> </td><td> </td><td> </td><td> </td><td bgcolor="blue"> </td><td>X</td><td> </td><td>X</td></tr>~~
	~~<tr bgcolor="green"><th>E</th><td> </td><td> </td><td> </td><td> </td><td> </td><td> </td><td> </td><td bgcolor="blue">X</td><td>X</td><td>X</td></tr>~~
	~~<tr><th>D</th><td> </td><td> </td><td> </td><td> </td><td> </td><td> </td><td> </td><td>X</td><td bgcolor="blue">X</td><td>X</td></tr>~~
	~~<tr bgcolor="green"><th>A</th><td> </td><td> </td><td> </td><td> </td><td> </td><td> </td><td> </td><td> </td><td> </td><td bgcolor="blue"> </td></tr>~~
	~~</table>~~
	~~Legend: W=Workflow,I=Instance,C=Connection,M=Module,O=OutputPort,I=InputPort,R=Run,E=Execution,D=DataItem,A=Annotation~~

	~~The upper part is normal edges.~~
	~~The lower part is secondary edges.~~

	~~Edges between same types of dataitem creates a need to specify the edge type, i.e. different types of edges.~~
	~~The execution/data edge has two different kinds of edges for two dataitems.~~
	~~e.g.~~
	~~Execution have as output a dataitem~~
	~~and~~
	~~Execution have as input a dataitem~~


	--[[User:Tommy\|Tommy]] 03:40, 13 April 2007 (MDT)--		--[[User:Tommy\|Tommy]] 03:40, 13 April 2007 (MDT)--

Tommy at 08:30, 3 May 2007

2007-05-03T08:30:29Z

← Older revision		Revision as of 08:30, 3 May 2007
Line 62:		Line 62:

	Execution:		Execution:
	getDataFromOutPort		<ul>
	getOutPortFromData		<li>getDataFromOutPort</li>
	getDataFromInPort		<li>getOutPortFromData</li>
	getInPortFromData		<li>getDataFromInPort</li>
	getExecutionFromInData		<li>getInPortFromData</li>
	getInDataFromExecution		<li>getExecutionFromInData</li>
	getExecutionFromOutData		<li>getInDataFromExecution</li>
	getOutDataFromExecution		<li>getExecutionFromOutData</li>
	getInstanceFromExecution		<li>getOutDataFromExecution</li>
	getExecutionFromInstance		<li>getInstanceFromExecution</li>
	getRunFromExecution		<li>getExecutionFromInstance</li>
	getExecutionFromRun		<li>getRunFromExecution</li>
	getRunFromWorkflow		<li>getExecutionFromRun</li>
	getWorkflowFromRun		<li>getRunFromWorkflow</li>
	getInstanceFromWorkflow		<li>getWorkflowFromRun</li>
	getWorkflowFromInstance		<li>getInstanceFromWorkflow</li>
	getParentDataItem		<li>getWorkflowFromInstance</li>
	getChildDataItem		<li>getParentDataItem</li>
	getParentExecution		<li>getChildDataItem</li>
	getChildExecution		<li>getParentExecution</li>
			<li>getChildExecution</li>
			</ul>

	Workflow:		Workflow:
	getModuleFromInstance		<ul>
	getInstanceFromModule		<li>getModuleFromInstance</li>
	getStartConnectionFromInstance		<li>getInstanceFromModule</li>
	getEndConnectionFromInstance		<li>getStartConnectionFromInstance</li>
	getStartInstanceFromConnection		<li>getEndConnectionFromInstance</li>
	getEndInstanceFromConnection		<li>getStartInstanceFromConnection</li>
	getConnectionFromWorkflow		<li>getEndInstanceFromConnection</li>
	getWorkflowFromConnection		<li>getConnectionFromWorkflow</li>
	getParentWorkflow		<li>getWorkflowFromConnection</li>
	getChildWorkflow		<li>getParentWorkflow</li>
	getConnectionFromInPort		<li>getChildWorkflow</li>
	getInPortFromConnection		<li>getConnectionFromInPort</li>
	getConnectionFromOutPort		<li>getInPortFromConnection</li>
	getOutPortFromConnection		<li>getConnectionFromOutPort</li>
			<li>getOutPortFromConnection</li>
			</ul>

	Module:		Module:
	getOutPortFromModule		<ul>
	getInPortFromModule		<li>getOutPortFromModule</li>
	getModuleFromOutPort		<li>getInPortFromModule</li>
	getModuleFromInPort		<li>getModuleFromOutPort</li>
			<li>getModuleFromInPort</li>
			</ul>

	Global functions:		Global functions:
	getAll(type)		<ul>
	getAll(type, annotation restriction)		<li>getAll(type)</li>
	getAnnotation		<li>getAll(type, annotation restriction)</li>
			<li>getAnnotation</li>
			</ul>
	=== Upstream ===		=== Upstream ===