VistrailsWiki - User contributions [en]

Web Services Examples

2008-07-23T01:08:19Z

Lcarlo: /* Web Services Demos Guide */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services URLs to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services URLs. Select wsdlList and click on the value field. You can type the web services URLs you want.

=Web Services Demos=

A set of Bioinformatics and other web services workflows demos are included in the [http://www.vistrails.org/images/WebServicesDemos.zip WebServicesDemos.zip] file. Before using them you need to add the web services URLs. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

=Web Services Demos Guide=
If you would like to learn more about creating workflows that use web services, download this [http://www.vistrails.org/images/WebServicesDemosGuide.zip guide].

Web Services Examples

2008-07-23T01:05:06Z

Lcarlo: /* Web Services Demos Guide */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services URLs to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services URLs. Select wsdlList and click on the value field. You can type the web services URLs you want.

=Web Services Demos=

A set of Bioinformatics and other web services workflows demos are included in the [http://www.vistrails.org/images/WebServicesDemos.zip WebServicesDemos.zip] file. Before using them you need to add the web services URLs. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

=Web Services Demos Guide=
If you would like to learn more about creating workflows that call web services, download this [http://www.vistrails.org/images/WebServicesDemosGuide.zip guide].

File:WebServicesDemosGuide.zip

2008-07-23T01:01:41Z

Lcarlo:

Web Services Examples

2008-07-23T00:03:16Z

Lcarlo: /* Web Services Demos Guide */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services URLs to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services URLs. Select wsdlList and click on the value field. You can type the web services URLs you want.

=Web Services Demos=

A set of Bioinformatics and other web services workflows demos are included in the [http://www.vistrails.org/images/WebServicesDemos.zip WebServicesDemos.zip] file. Before using them you need to add the web services URLs. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

=Web Services Demos Guide=
If you would like to learn more about creating workflows that call web services, download this [http://www.vistrails.org/images/WebServicesDemosGuide.pdf.zip guide].

Web Services Examples

2008-07-22T23:51:52Z

Lcarlo:

Web Services Examples

2008-06-03T23:18:02Z

Lcarlo: /* Web Services Demos */

Web Services Examples

2008-06-03T23:16:35Z

Lcarlo: /* Web Services Demos */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services URLs to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services URLs. Select wsdlList and click on the value field. You can type the web services URLs you want.

=Web Services Demos=

A set of Bioinformatic and other web services demos are included in the [http://www.vistrails.org/images/WebServicesDemos.zip WebServicesDemos.zip] file. Before using them you need to add the web services URLs. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Web Services Examples

2008-06-03T23:13:59Z

Lcarlo:

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services URLs to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services URLs. Select wsdlList and click on the value field. You can type the web services URLs you want.

=Web Services Demos=

A set of demos of Bioinformatics Workflows are included in the [http://www.vistrails.org/images/WebServicesDemos.zip WebServicesDemos.zip] file. Before using them you need to add the web services that the demo uses. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Downloads

2008-06-03T23:11:36Z

Lcarlo: /* Web Services Demos */

== Latest Release ==

==== Source and Binaries ====

{| {{Prettytable}}
|-
|{{Hl4}}|'''1.1 revision 1143 (2008-05-16 04:00)''' [[known_issues|Known Issues]] {{SFReleaseNotes
|link=http://sourceforge.net/project/shownotes.php?release_id=599542&group_id=188281}}
|{{Hl4}}|'''Size'''
|{{Hl4}}|'''Architecture'''
|{{Hl4}}|'''Type'''
|-
|
* {{targz
|link=http://downloads.sourceforge.net/vistrails/vistrails-src-1.1-rev1143.tar.gz
|text=vistrails-src-1.1-rev1143.tar.gz}}
|2513281
|all
|Source .tar.gz
|-
|
* {{zip
|link=http://downloads.sourceforge.net/vistrails/vistrails-setup-1.1rev1143.zip
|text=vistrails-setup-1.1rev1143.zip}}
|71441727
|i586
|.zip (32-bit Windows (XP or higher))
|-
|
* {{dmg
|link=http://downloads.sourceforge.net/vistrails/vistrails-mac-10.4-intel-1.1-rev1143.dmg
|text=vistrails-mac-10.4-intel-1.1-rev1143.dmg}}
|77722240
|Mac OS X 10.4+ (x86)
|.dmg (Mac bundle)
|-
|
* {{dmg
|link=http://downloads.sourceforge.net/vistrails/vistrails-mac-10.4-ppc-1.1-rev1143.dmg
|text=vistrails-mac-10.4-ppc-1.1-rev1143.dmg}}
|85666619
|Mac OS X 10.4+ (PPC)
|.dmg (Mac bundle)
|-
|
* {{Pdf
|link=http://downloads.sourceforge.net/vistrails/vistrails-usersguide-rev119.pdf
|text=vistrails-usersguide-rev119.pdf}}
|5645174
|all
|.pdf
|-
|}

* [[all_releases|Previous releases]] are also available.

* If you have problems downloading from our repository, we keep mirror copies at [http://sourceforge.net/projects/vistrails sourceforge].

==== Data files for Examples ====
If you download the source release you might want to download the data files (they are already included in the binary releases). Just decompress the package to the examples folder.

* {{targz
|link=http://www.vistrails.org/download/download.php?id=data.tar.gz
|text=data.tar.gz}}

== Building from Source ==

Instructions are available for [[Building From Source|building VisTrails from source]] for all supported platforms.

==== SuSE 10.2 ====

Sam Preston wrote us warning that there may be issues with the current BLAS, LAPACK and numpy rpms available through YaST on SuSE 10.2:

I have run into another problem not directly
related to VisTrails, though. I installed blas, lapack, and numpy
from Yast in OpenSUSE 10.2, and got some errors when trying to build
scipy. After looking at a couple of discussions, it seems that these
packages are broken in 10.2:

http://readlist.com/lists/suse.com/suse-linux-e/22/111366.html
http://projects.scipy.org/pipermail/numpy-discussion/2007-June/028146.html

==== Ubuntu Packages ====

VisTrails includes integrated support for checking and installing required packages on Ubuntu. See [[InstallingVisTrailsOnUbuntu|installing VisTrails on Ubuntu]] for more information.

==== VisTrails Module Packages ====

VisTrails makes use of packages of Modules to define and form valid workflows. Some packages are maintained and distributed with the VisTrails itself and are considered part of the core functionality. However, work has also been done on developing user-made and maintained Module Packages. Below are a current list of packages maintained by VisTrails and user packages maintained outside the core source repository. The Package Name field describes the name required by the addPackage() directive in the .vistrails/startup.py file required to load the package.

* [[MainVisTrailsPackages | Packages distributed with VisTrails]]
* [[UserContributedPackages | Packages developed by users]]

== Web Services Demos ==

Some Bioinformatics workflows examples are available [[Web_Services_Examples|here]].

== Mailing List ==

Join the VisTrails [[MailingLists|mailing list]] to receive release announcements as well as post questions.

Web Services Examples

2008-06-03T23:04:04Z

Lcarlo: /* Adding web services URLs in VisTrails */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services URLs to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services URLs. Select wsdlList and click on the value field. You can type the web services URLs you want.

=Web Services Demos in VisTrails=

A set of demos of Bioinformatics Workflows are included in the [http://www.vistrails.org/images/WebServicesDemos.zip WebServicesDemos.zip] file. Before using them you need to add the web services that the demo uses. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Downloads

2008-06-03T22:59:02Z

Lcarlo: /* Web Services Workflows Examples */

== Latest Release ==

==== Source and Binaries ====

{| {{Prettytable}}
|-
|{{Hl4}}|'''1.1 revision 1143 (2008-05-16 04:00)''' [[known_issues|Known Issues]] {{SFReleaseNotes
|link=http://sourceforge.net/project/shownotes.php?release_id=599542&group_id=188281}}
|{{Hl4}}|'''Size'''
|{{Hl4}}|'''Architecture'''
|{{Hl4}}|'''Type'''
|-
|
* {{targz
|link=http://downloads.sourceforge.net/vistrails/vistrails-src-1.1-rev1143.tar.gz
|text=vistrails-src-1.1-rev1143.tar.gz}}
|2513281
|all
|Source .tar.gz
|-
|
* {{zip
|link=http://downloads.sourceforge.net/vistrails/vistrails-setup-1.1rev1143.zip
|text=vistrails-setup-1.1rev1143.zip}}
|71441727
|i586
|.zip (32-bit Windows (XP or higher))
|-
|
* {{dmg
|link=http://downloads.sourceforge.net/vistrails/vistrails-mac-10.4-intel-1.1-rev1143.dmg
|text=vistrails-mac-10.4-intel-1.1-rev1143.dmg}}
|77722240
|Mac OS X 10.4+ (x86)
|.dmg (Mac bundle)
|-
|
* {{dmg
|link=http://downloads.sourceforge.net/vistrails/vistrails-mac-10.4-ppc-1.1-rev1143.dmg
|text=vistrails-mac-10.4-ppc-1.1-rev1143.dmg}}
|85666619
|Mac OS X 10.4+ (PPC)
|.dmg (Mac bundle)
|-
|
* {{Pdf
|link=http://downloads.sourceforge.net/vistrails/vistrails-usersguide-rev119.pdf
|text=vistrails-usersguide-rev119.pdf}}
|5645174
|all
|.pdf
|-
|}

* [[all_releases|Previous releases]] are also available.

* If you have problems downloading from our repository, we keep mirror copies at [http://sourceforge.net/projects/vistrails sourceforge].

==== Data files for Examples ====
If you download the source release you might want to download the data files (they are already included in the binary releases). Just decompress the package to the examples folder.

* {{targz
|link=http://www.vistrails.org/download/download.php?id=data.tar.gz
|text=data.tar.gz}}

== Building from Source ==

Instructions are available for [[Building From Source|building VisTrails from source]] for all supported platforms.

==== SuSE 10.2 ====

Sam Preston wrote us warning that there may be issues with the current BLAS, LAPACK and numpy rpms available through YaST on SuSE 10.2:

I have run into another problem not directly
related to VisTrails, though. I installed blas, lapack, and numpy
from Yast in OpenSUSE 10.2, and got some errors when trying to build
scipy. After looking at a couple of discussions, it seems that these
packages are broken in 10.2:

http://readlist.com/lists/suse.com/suse-linux-e/22/111366.html
http://projects.scipy.org/pipermail/numpy-discussion/2007-June/028146.html

==== Ubuntu Packages ====

VisTrails includes integrated support for checking and installing required packages on Ubuntu. See [[InstallingVisTrailsOnUbuntu|installing VisTrails on Ubuntu]] for more information.

==== VisTrails Module Packages ====

VisTrails makes use of packages of Modules to define and form valid workflows. Some packages are maintained and distributed with the VisTrails itself and are considered part of the core functionality. However, work has also been done on developing user-made and maintained Module Packages. Below are a current list of packages maintained by VisTrails and user packages maintained outside the core source repository. The Package Name field describes the name required by the addPackage() directive in the .vistrails/startup.py file required to load the package.

* [[MainVisTrailsPackages | Packages distributed with VisTrails]]
* [[UserContributedPackages | Packages developed by users]]

== Web Services Demos ==

Some Bioinformatics workflows examples are provided [[Web_Services_Examples|here]].

== Mailing List ==

Join the VisTrails [[MailingLists|mailing list]] to receive release announcements as well as post questions.

Web Services Examples

2008-06-03T22:55:32Z

Lcarlo: /* Web Services Demos in VisTrails */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services urls to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services urls. Select wsdlList and click on the value field. You can type the web services urls you want.

=Web Services Demos in VisTrails=

A set of demos of Bioinformatics Workflows are included in the [http://www.vistrails.org/images/WebServicesDemos.zip WebServicesDemos.zip] file. Before using them you need to add the web services that the demo uses. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Web Services Examples

2008-06-03T22:55:11Z

Lcarlo: /* Web Services Demos in VisTrails */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services urls to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services urls. Select wsdlList and click on the value field. You can type the web services urls you want.

=Web Services Demos in VisTrails=

A set of demos of Bioinformatics Workflows are included in the [http://www.vistrails.org/images/WebServicesDemos.zip WebServicesDemos.zip file]. Before using them you need to add the web services that the demo uses. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Web Services Examples

2008-06-03T22:54:28Z

Lcarlo: /* Web Services Demos in VisTrails */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services urls to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services urls. Select wsdlList and click on the value field. You can type the web services urls you want.

=Web Services Demos in VisTrails=

A set of demos of Bioinformatics Workflows are included in the [http://www.vistrails.org/images/WebServicesDemos.zip file|WebServicesDemos.zip]. Before using them you need to add the web services that the demo uses. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Web Services Examples

2008-06-03T22:53:41Z

Lcarlo: /* Web Services Demos in VisTrails */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services urls to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services urls. Select wsdlList and click on the value field. You can type the web services urls you want.

=Web Services Demos in VisTrails=

A set of demos of Bioinformatics Workflows are included in the [WebServicesDemos.zip file|http://www.vistrails.org/images/WebServicesDemos.zip]. Before using them you need to add the web services that the demo uses. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Web Services Examples

2008-06-03T22:52:31Z

Lcarlo: /* Web Services Demos in VisTrails */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services urls to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services urls. Select wsdlList and click on the value field. You can type the web services urls you want.

=Web Services Demos in VisTrails=

A set of demos of Bioinformatics Workflows are included in the [[WebServicesDemos.zip file|http://www.vistrails.org/images/WebServicesDemos.zip]]. Before using them you need to add the web services that the demo uses. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Web Services Examples

2008-06-03T22:51:51Z

Lcarlo: /* Web Services Demos in VisTrails */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services urls to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services urls. Select wsdlList and click on the value field. You can type the web services urls you want.

=Web Services Demos in VisTrails=

A set of demos of Bioinformatics Workflows are included in the [[http://www.vistrails.org/images/WebServicesDemos.zip|"WebServicesDemos.zip file"]]. Before using them you need to add the web services that the demo uses. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Web Services Examples

2008-06-03T22:50:59Z

Lcarlo: /* Web Services Demos in VisTrails */

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

==Adding web services URLs in VisTrails==

To add the web services urls to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services urls. Select wsdlList and click on the value field. You can type the web services urls you want.

=Web Services Demos in VisTrails=

A set of demos of Bioinformatics Workflows are included in the [[http://www.vistrails.org/images/WebServicesDemos.zip|WebServicesDemos.zip file]]. Before using them you need to add the web services that the demo uses. They are specified in the following subsections.

==Data Transformation==

* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

==EMBOSS web services==

*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

==KEGG web services==

*http://soap.genome.jp/KEGG.wsdl

==KEGG Search Entities web service==

*http://soap.genome.jp/KEGG.wsdl
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

==ChEBI web service==

*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

==NOAA web services==

*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

Web Services Examples

2008-06-03T22:41:29Z

Lcarlo: /* Adding web services URLs in VisTrails */

Web Services Examples

2008-06-03T22:41:08Z

Lcarlo: /* Enabling the webServices package */

Web Services Examples

2008-06-03T22:40:36Z

Lcarlo: New page: =Configuring Web Services in VisTrails= ==Enabling the webServices package== ==Adding web services URLs in VisTrails== =Web Services Demos in VisTrails= ==Data Transformation== ==EMBOSS we...

=Configuring Web Services in VisTrails=
==Enabling the webServices package==
==Adding web services URLs in VisTrails==
=Web Services Demos in VisTrails=
==Data Transformation==
==EMBOSS web services==
==KEGG web services==
==KEGG Search Entities web service==

Downloads

2008-06-03T22:34:30Z

Lcarlo: /* Web Services Workflows Examples */

== Latest Release ==

==== Source and Binaries ====

{| {{Prettytable}}
|-
|{{Hl4}}|'''1.1 revision 1143 (2008-05-16 04:00)''' [[known_issues|Known Issues]] {{SFReleaseNotes
|link=http://sourceforge.net/project/shownotes.php?release_id=599542&group_id=188281}}
|{{Hl4}}|'''Size'''
|{{Hl4}}|'''Architecture'''
|{{Hl4}}|'''Type'''
|-
|
* {{targz
|link=http://downloads.sourceforge.net/vistrails/vistrails-src-1.1-rev1143.tar.gz
|text=vistrails-src-1.1-rev1143.tar.gz}}
|2513281
|all
|Source .tar.gz
|-
|
* {{zip
|link=http://downloads.sourceforge.net/vistrails/vistrails-setup-1.1rev1143.zip
|text=vistrails-setup-1.1rev1143.zip}}
|71441727
|i586
|.zip (32-bit Windows (XP or higher))
|-
|
* {{dmg
|link=http://downloads.sourceforge.net/vistrails/vistrails-mac-10.4-intel-1.1-rev1143.dmg
|text=vistrails-mac-10.4-intel-1.1-rev1143.dmg}}
|77722240
|Mac OS X 10.4+ (x86)
|.dmg (Mac bundle)
|-
|
* {{dmg
|link=http://downloads.sourceforge.net/vistrails/vistrails-mac-10.4-ppc-1.1-rev1143.dmg
|text=vistrails-mac-10.4-ppc-1.1-rev1143.dmg}}
|85666619
|Mac OS X 10.4+ (PPC)
|.dmg (Mac bundle)
|-
|
* {{Pdf
|link=http://downloads.sourceforge.net/vistrails/vistrails-usersguide-rev119.pdf
|text=vistrails-usersguide-rev119.pdf}}
|5645174
|all
|.pdf
|-
|}

* [[all_releases|Previous releases]] are also available.

* If you have problems downloading from our repository, we keep mirror copies at [http://sourceforge.net/projects/vistrails sourceforge].

==== Data files for Examples ====
If you download the source release you might want to download the data files (they are already included in the binary releases). Just decompress the package to the examples folder.

* {{targz
|link=http://www.vistrails.org/download/download.php?id=data.tar.gz
|text=data.tar.gz}}

== Building from Source ==

Instructions are available for [[Building From Source|building VisTrails from source]] for all supported platforms.

==== SuSE 10.2 ====

Sam Preston wrote us warning that there may be issues with the current BLAS, LAPACK and numpy rpms available through YaST on SuSE 10.2:

I have run into another problem not directly
related to VisTrails, though. I installed blas, lapack, and numpy
from Yast in OpenSUSE 10.2, and got some errors when trying to build
scipy. After looking at a couple of discussions, it seems that these
packages are broken in 10.2:

http://readlist.com/lists/suse.com/suse-linux-e/22/111366.html
http://projects.scipy.org/pipermail/numpy-discussion/2007-June/028146.html

==== Ubuntu Packages ====

VisTrails includes integrated support for checking and installing required packages on Ubuntu. See [[InstallingVisTrailsOnUbuntu|installing VisTrails on Ubuntu]] for more information.

==== VisTrails Module Packages ====

VisTrails makes use of packages of Modules to define and form valid workflows. Some packages are maintained and distributed with the VisTrails itself and are considered part of the core functionality. However, work has also been done on developing user-made and maintained Module Packages. Below are a current list of packages maintained by VisTrails and user packages maintained outside the core source repository. The Package Name field describes the name required by the addPackage() directive in the .vistrails/startup.py file required to load the package.

* [[MainVisTrailsPackages | Packages distributed with VisTrails]]
* [[UserContributedPackages | Packages developed by users]]

== Web Services Workflows Examples ==

Some Bioinformatics workflows examples are provided [[Web_Services_Examples|here]].

== Mailing List ==

Join the VisTrails [[MailingLists|mailing list]] to receive release announcements as well as post questions.

Downloads

2008-06-03T22:34:05Z

Lcarlo:

== Latest Release ==

==== Source and Binaries ====

{| {{Prettytable}}
|-
|{{Hl4}}|'''1.1 revision 1143 (2008-05-16 04:00)''' [[known_issues|Known Issues]] {{SFReleaseNotes
|link=http://sourceforge.net/project/shownotes.php?release_id=599542&group_id=188281}}
|{{Hl4}}|'''Size'''
|{{Hl4}}|'''Architecture'''
|{{Hl4}}|'''Type'''
|-
|
* {{targz
|link=http://downloads.sourceforge.net/vistrails/vistrails-src-1.1-rev1143.tar.gz
|text=vistrails-src-1.1-rev1143.tar.gz}}
|2513281
|all
|Source .tar.gz
|-
|
* {{zip
|link=http://downloads.sourceforge.net/vistrails/vistrails-setup-1.1rev1143.zip
|text=vistrails-setup-1.1rev1143.zip}}
|71441727
|i586
|.zip (32-bit Windows (XP or higher))
|-
|
* {{dmg
|link=http://downloads.sourceforge.net/vistrails/vistrails-mac-10.4-intel-1.1-rev1143.dmg
|text=vistrails-mac-10.4-intel-1.1-rev1143.dmg}}
|77722240
|Mac OS X 10.4+ (x86)
|.dmg (Mac bundle)
|-
|
* {{dmg
|link=http://downloads.sourceforge.net/vistrails/vistrails-mac-10.4-ppc-1.1-rev1143.dmg
|text=vistrails-mac-10.4-ppc-1.1-rev1143.dmg}}
|85666619
|Mac OS X 10.4+ (PPC)
|.dmg (Mac bundle)
|-
|
* {{Pdf
|link=http://downloads.sourceforge.net/vistrails/vistrails-usersguide-rev119.pdf
|text=vistrails-usersguide-rev119.pdf}}
|5645174
|all
|.pdf
|-
|}

* [[all_releases|Previous releases]] are also available.

* If you have problems downloading from our repository, we keep mirror copies at [http://sourceforge.net/projects/vistrails sourceforge].

==== Data files for Examples ====
If you download the source release you might want to download the data files (they are already included in the binary releases). Just decompress the package to the examples folder.

* {{targz
|link=http://www.vistrails.org/download/download.php?id=data.tar.gz
|text=data.tar.gz}}

== Building from Source ==

Instructions are available for [[Building From Source|building VisTrails from source]] for all supported platforms.

==== SuSE 10.2 ====

Sam Preston wrote us warning that there may be issues with the current BLAS, LAPACK and numpy rpms available through YaST on SuSE 10.2:

I have run into another problem not directly
related to VisTrails, though. I installed blas, lapack, and numpy
from Yast in OpenSUSE 10.2, and got some errors when trying to build
scipy. After looking at a couple of discussions, it seems that these
packages are broken in 10.2:

http://readlist.com/lists/suse.com/suse-linux-e/22/111366.html
http://projects.scipy.org/pipermail/numpy-discussion/2007-June/028146.html

==== Ubuntu Packages ====

VisTrails includes integrated support for checking and installing required packages on Ubuntu. See [[InstallingVisTrailsOnUbuntu|installing VisTrails on Ubuntu]] for more information.

==== VisTrails Module Packages ====

VisTrails makes use of packages of Modules to define and form valid workflows. Some packages are maintained and distributed with the VisTrails itself and are considered part of the core functionality. However, work has also been done on developing user-made and maintained Module Packages. Below are a current list of packages maintained by VisTrails and user packages maintained outside the core source repository. The Package Name field describes the name required by the addPackage() directive in the .vistrails/startup.py file required to load the package.

* [[MainVisTrailsPackages | Packages distributed with VisTrails]]
* [[UserContributedPackages | Packages developed by users]]

== Web Services Workflows Examples ==

Some bioinformatics workflows examples are provided [[Web_Services_Examples|here]].

== Mailing List ==

Join the VisTrails [[MailingLists|mailing list]] to receive release announcements as well as post questions.

File:WebServicesDemos.zip

2008-05-29T03:30:06Z

Lcarlo:

File:XSLTSample.xsl

2008-05-22T18:14:58Z

Lcarlo:

People

2008-03-06T19:42:15Z

Lcarlo:

== Principal Investigators ==

* Dr. [http://www.cs.utah.edu/~juliana Juliana Freire]
* Dr. Claudio Silva -- Page on wiki: [[User:Csilva]]

== Current Team ==

* [http://www.sci.utah.edu/~eranders Erik Anderson]
* Jason Callahan
* [http://www.sci.utah.edu/~stevec Steven P. Callahan]
* [http://www.sci.utah.edu/cgi-bin/SCIpersonnel.pl?username=lcarlo Lorena Carlo]
* [http://www.cs.utah.edu/~dakoop David Koop]
* Lauro Lins
* [http://www.sci.utah.edu/~emanuele Emanuele Santos]
* [http://www.sci.utah.edu/~cscheid Carlos E. Scheidegger]
* [http://www.sci.utah.edu/~hvo Huy T. Vo]

== Previous Members ==

* Louis Bavoil
* Marcelo Nery dos Santos
* Nathan Smith
* Wayne Tyler